Plant Genome Bioinformatics Analysis Platform
CD BioSciences has a variety of molecular biology and sequence analysis tools. Whether it's improving productivity, increasing visibility and insight, or reducing errors and risk, our platform unlocks the value of lab data for clients.
Our mission is to provide a comprehensive, user-friendly platform for analyzing and interpreting genomic data. Utilizing cutting-edge technologies and incorporating the latest scientific insights, our platform is designed to streamline the genomic analysis process and facilitate the discovery of new insights and breakthroughs in the field of genomics.
Platform Content
QTL-seq analysis
- SNP and InDel detection
- SNP and InDel positional and functional annotation
- SNP conversion and subversion information statistics
- SNP and InDel mixing information statistics
- Progeny SNP frequency analysis
- Comparison of polymorphism between parents
GBS/RAD-seq sequencing data analysis
- Co-dominant SNP genotyping
- Genetic Diversity Analysis
- Gene and QTL mapping
- Batch segregation analysis
- Discovery of (rare) SNP variants
- Genomic selection/prediction
SSR analysis
- SSR screening results
- SSR motif calling
- SSR cluster analysis
- SSRs polymorphism evaluation
- SSR primer design
Genetic mapping analysis
- Population SNP detection
- Population SNP annotation
- Polymorphic tag development
- Genetic map construction and quality evaluation
Genome-wide association analysis (GWAS)
- SNP and CNV detection and annotation
- Phylogenetic tree construction
- Principal component and trait association analysis
- Linkage disequilibrium analysis
- Functional annotation of genes in target trait regions
- Construction of monomorphic mapping
Population evolution analysis
- SNP, Indel, CNV, and other mutation detection
- Phylogenetic tree construction
- PCA, genetic structure, and gene communication analysis
- Estimation of population θπ polymorphism parameters
- Gene function annotation and enrichment analysis
- Analysis of divergence history between sample branches
Target region sequencing data analysis
- Sequencing depth and coverage uniformity analysis
- SNP and InDel Mutation Information Detection
- RefGene annotation of SNPs and InDels
- SNP and InDel database analysis
- Single-sample SNP conservation prediction
- Distribution statistics of SNP and InDel on gene element
Whole genome resequencing analysis
- SNP/InDel/SV/CNV detection and annotation
- SNP/InDel/SV/CNV effect prediction and statistics
- Circos plot display of genomic variants
- GO/KEGG classification of interest genes
- Enrichment analysis of interest genes
Application Field
- Comparative genomics. Comparing plant genomes to identify similarities, differences, and evolutionary relationships
- Functional genomics. Identifying differentially expressed genes, selective splicing events, and regulatory elements
- Epigenomics. Providing insights into epigenetic regulation, transgenerational inheritance, and environmental responses
- Evolutionary genomics. Reconstructing the evolutionary history of plant species, understanding speciation events, and identifying genetic changes that drive adaptation and diversification
- Macrogenomics. Characterizing microbial diversity, identifying functional genes, and understanding interactions between plants and associated microbes
- Crop improvement and breeding. Identifying relevant genetic markers that enable marker-assisted selection, genomic selection, and breeding of improved crop varieties.
CD BioSciences is the leading provider of comprehensive platforms for plant genome bioinformatics analysis. We offer a variety of bioinformatics analysis tools customized specifically for plant genomes, enabling precise and efficient exploration of genomic data. If you are interested in our platform, please feel free to contact us. Whether you are involved in crop improvement, plant breeding, or basic research, our platform is an invaluable resource to accelerate your scientific discoveries.
For research use only, not for clinical use.